Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
TFAP2C

Cell type

Cell type Class
Placenta
Cell type
Trophoblast stem cells
NA
NA

Attributes by original data submitter

Sample

source_name
human trophoblast stem cell
cell line
CT27
cell state
stem state trophoblast cell
chip antibody
Anti-rabbit AP-2 gamma antibody (1:50, #2320, Cell Signaling)
geo_loc_name
missing
collection_date
missing

Sequenced DNA Library

library_name
ERROR: cannot retrieve data from NCBI: too many requests
library_strategy
ERROR: cannot retrieve data from NCBI: too many requests
library_source
ERROR: cannot retrieve data from NCBI: too many requests
library_selection
ERROR: cannot retrieve data from NCBI: too many requests
library_construction_protocol
ERROR: cannot retrieve data from NCBI: too many requests

Sequencing Platform

instrument_model
ERROR: cannot retrieve data from NCBI: too many requests
cycle_sequence
ERROR: cannot retrieve data from NCBI: too many requests
cycle_count
ERROR: cannot retrieve data from NCBI: too many requests
flow_sequence
ERROR: cannot retrieve data from NCBI: too many requests
flow_count
ERROR: cannot retrieve data from NCBI: too many requests
key_sequence
ERROR: cannot retrieve data from NCBI: too many requests

hg38

Number of total reads
62110780
Reads aligned (%)
92.5
Duplicates removed (%)
54.9
Number of peaks
19645 (qval < 1E-05)

hg19

Number of total reads
62110780
Reads aligned (%)
91.7
Duplicates removed (%)
55.6
Number of peaks
18724 (qval < 1E-05)

Base call quality data from DBCLS SRA